{ "_id": "6a1fce68b401979e734337bf", "Package": "qgcomp", "Title": "Quantile G-Computation", "Version": "2.19.0", "Date": "2026-05-04", "Authors@R": "person(\"Alexander\", \"Keil\", , \"alex.keil@nih.gov\", role = c(\"aut\", \"cre\"))", "Description": "G-computation for a set of time-fixed exposures with\nquantile-based basis functions, possibly under linearity and\nhomogeneity assumptions. This approach estimates a regression\nline corresponding to the expected change in the outcome (on\nthe link basis) given a simultaneous increase in the\nquantile-based category for all exposures. Works with\ncontinuous, binary, and right-censored time-to-event outcomes.\nReference: Alexander P. Keil, Jessie P. Buckley, Katie M.\nOBrien, Kelly K. Ferguson, Shanshan Zhao, and Alexandra J.\nWhite (2019) A quantile-based g-computation approach to\naddressing the effects of exposure mixtures;\n.", "License": "GPL (>= 2)", "URL": "https://github.com/alexpkeil1/qgcomp/", "BugReports": "https://github.com/alexpkeil1/qgcomp/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Language": "en-US", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "cmake make libicu-dev", "Repository": "https://alexpkeil1.r-universe.dev", "Date/Publication": "2026-05-04 20:06:21 UTC", "RemoteUrl": "https://github.com/alexpkeil1/qgcomp", "RemoteRef": "HEAD", "RemoteSha": "f6c3c66721c4110011931849d88ee029304f479d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-03 06:43:54 UTC", "User": "root" }, "Author": "Alexander Keil [aut, cre]", "Maintainer": "Alexander Keil ", "MD5sum": "025d36e9e02bfbbeb00557839e9b6d03", "_user": "alexpkeil1", "_type": "src", "_file": "qgcomp_2.19.0.tar.gz", "_fileid": "6482b6de4aecdb83bf7c428ca35128a5a89edc61462128bf923d780af1f53e18", "_filesize": 2310483, "_sha256": "6482b6de4aecdb83bf7c428ca35128a5a89edc61462128bf923d780af1f53e18", "_created": "2026-06-03T06:43:54.000Z", "_published": "2026-06-03T06:49:12.826Z", "_distro": "noble", "_jobs": [ { "job": 79237163263, "time": 277, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7377597795" }, { "job": 79237163252, "time": 270, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7377595587" }, { "job": 79237163262, "time": 167, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7377567786" }, { "job": 79237163256, "time": 190, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7377573764" }, { "job": 79236434191, "time": 326, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7377520369" }, { "job": 79237163255, "time": 145, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7377562212" }, { "job": 79237163251, "time": 199, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7377576663" }, { "job": 79237163264, "time": 213, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7377580616" }, { "job": 79237163265, "time": 219, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7377581907" } ], "_buildurl": "https://github.com/r-universe/alexpkeil1/actions/runs/26868118865", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/alexpkeil1/qgcomp", "_commit": { "id": "f6c3c66721c4110011931849d88ee029304f479d", "author": "Alex Keil ", "committer": "Alex Keil ", "message": "Add partial-average methods and printers\n\nIntroduce experimental partial-average estimation: add .qgcomp.partials_avg and .qgcomp.partials_avg_bootci implementations (with future-based resampling, Rubin-style variance pooling and bootstrap CIs). Add S3 print methods (print.qgcomppartialavg, print.qgcomppartialavg_boot) and corresponding Rd help files, and register the S3 methods in NAMESPACE. Bump package version/date to 2.19.0 and update README.\n", "time": 1777925181 }, "_maintainer": { "name": "Alexander Keil", "email": "alex.keil@nih.gov", "login": "alexpkeil1gov", "twitter": "@PronouncedKeil", "description": "Public health researcher (alt account)", "uuid": 94704975 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "AER", "role": "Imports" }, { "package": "arm", "role": "Imports" }, { "package": "future", "role": "Imports" }, { "package": "future.apply", "role": "Imports" }, { "package": "generics", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.3.0", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "gridExtra", "role": "Imports" }, { "package": "nnet", "role": "Imports" }, { "package": "numDeriv", "role": "Imports" }, { "package": "pscl", "role": "Imports" }, { "package": "rootSolve", "role": "Imports" }, { 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"qgcomp-advanced-vignette.html", "title": "Advanced topics for the qgcomp package: time-to-event, clustering, partial effects, weighting, missing data", "author": "Alexander Keil", "engine": "knitr::knitr", "headings": [ "Table of Contents", "Example 7: time-to-event analysis and parallel processing", "Example 8: clustering", "Example 9: partial effects", "Example 10: multinomial outcomes", "Example 11: sample weighting from, e.g. NHANES", "Missing data, limits of detection and multiple imputation", "Limits of detection", "Multiple imputation", "References", "Acknowledgments" ], "created": "2024-06-29 01:07:27", "modified": "2025-03-27 15:38:17", "commits": 6 }, { "source": "qgcomp-basic-vignette.Rmd", "filename": "qgcomp-basic-vignette.html", "title": "Basic topics for the qgcomp package: g-computation on exposure quantiles", "author": "Alexander Keil", "engine": "knitr::knitr", "headings": [ "Table of Contents", "Introduction", "The model", "How to use the qgcomp package", "Example 1: linear model", "Example 2: conditional odds ratio, marginal odds ratio in a logistic model", "Example 3: adjusting for covariates, plotting estimates", "Example 4: non-linearity (and non-homogeneity)", "Aside: some details on qgcomp methods for non-linearity", "Interpretation of model parameters", "Example 5: comparing model fits and further exploring non-linearity", "Graphical approach to explore non-linearity in a correlated subset of exposures using splines", "Caution about graphical approaches", "Example 6: miscellaneous other ways to allow non-linearity", "using indicator terms for each quantile", "interactions between indicator terms", "breaks at specific quantiles (these breaks act on the quantized basis)", "Statistical approach explore non-linearity in a correlated subset of exposures using splines", "FAQ", "Why don't I get weights/scaled effects from the boot or ee functions? (and other questions about the weights/scaled effect sizes)", "Do I need to model non-linearity and non-additivity of exposures?", "Do I have to use quantiles?", "Can I cite this document?", "Where else can I get help?", "References", "Acknowledgments" ], "created": "2024-06-29 01:07:27", "modified": "2025-03-27 15:38:17", "commits": 10 } ], "_score": 8.85145588942494, "_indexed": true, "_nocasepkg": "qgcomp", "_universes": [ "alexpkeil1", "alexpkeil1gov" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.19.0", "date": "2026-06-03T06:46:51.000Z", "distro": "noble", "commit": "f6c3c66721c4110011931849d88ee029304f479d", "fileid": "7d1a8905689e6cc8cb3ce98a934871c1ec6317d9bbc3808bef2f17614f54581c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/alexpkeil1/actions/runs/26868118865" }, { "r": "4.6.0", "os": "linux", "version": "2.19.0", "date": "2026-06-03T06:47:03.000Z", "distro": "noble", "commit": "f6c3c66721c4110011931849d88ee029304f479d", "fileid": "17d8aa41dcf6becdb35839883e65b16e20f3de80bb3e9336095a39e812b1c0c6", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/alexpkeil1/actions/runs/26868118865" }, { "r": "4.5.3", "os": "mac", "version": "2.19.0", "date": "2026-06-03T06:45:47.000Z", "commit": "f6c3c66721c4110011931849d88ee029304f479d", "fileid": "5e0d16145a6dd96a0c17be276c1349c25a236307e226434b6bd3b250d01f71d6", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/alexpkeil1/actions/runs/26868118865" }, { "r": "4.6.0", "os": "mac", "version": "2.19.0", "date": "2026-06-03T06:46:03.000Z", "commit": "f6c3c66721c4110011931849d88ee029304f479d", "fileid": "06182a738eb29dad34dac2af77f3568601fe77975f4528176ad48094f3a8d67d", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/alexpkeil1/actions/runs/26868118865" }, { "r": "4.6.0", "os": "wasm", "version": "2.19.0", "date": "2026-06-03T06:46:44.000Z", "commit": "f6c3c66721c4110011931849d88ee029304f479d", "fileid": "0d91e590382db6e83f76001fe92629a70484528031b8fa3cc546c661a35a34a0", "status": "success", "buildurl": "https://github.com/r-universe/alexpkeil1/actions/runs/26868118865" }, { "r": "4.7.0", "os": "win", "version": "2.19.0", "date": "2026-06-03T06:45:21.000Z", "commit": "f6c3c66721c4110011931849d88ee029304f479d", "fileid": "b540c0a6542a350b98829f066a98061d240e5a662d8f4da4683f2dffc9b6e90f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/alexpkeil1/actions/runs/26868118865" }, { "r": "4.5.3", "os": "win", "version": "2.19.0", "date": "2026-06-03T06:45:20.000Z", "commit": "f6c3c66721c4110011931849d88ee029304f479d", "fileid": "fcc13d640b85f05f989d2a76b7ca16292099b8390497bcf9dbe28fd69efe255f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/alexpkeil1/actions/runs/26868118865" }, { "r": "4.6.0", "os": "win", "version": "2.19.0", "date": "2026-06-03T06:45:27.000Z", "commit": "f6c3c66721c4110011931849d88ee029304f479d", "fileid": "03057c89e71ab4f49fef032eede4c6e07052ef4dde8422cc090591da94727b6f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/alexpkeil1/actions/runs/26868118865" } ] }